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Children and Youth with Special Health Needs (CYSHN)

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Children and Youth with Special Health Needs (CYSHN)

  • CYSHN Home
  • About CYSHN
  • Information and Resources
  • Diseases and Conditions

Programs

  • Birth Defects Monitoring and Analysis
  • Early Hearing Detection and Intervention
  • Follow Along Program
  • Longitudinal Follow-up for Newborn Screening Conditions
Contact Info
Children and Youth with Special Health Needs
651-201-3650
800-728-5420 (toll-free)
health.cyshn@state.mn.us

Contact Info

Children and Youth with Special Health Needs
651-201-3650
800-728-5420 (toll-free)
health.cyshn@state.mn.us

Rectal and Large Intestinal Atresia / Stenosis (also called anal atresia)

Condition Description

Rectal and large intestinal atresia or stenosis is the term used to describe a group of rare congenital conditions of the lower gastro-intestinal tract (bowel). It can range from absence of these structures to malformations of the anus and rectum (called colon, rectum, or anal atresia). If these lower gastrointestinal structures are present but only partially open to the passage of stool the condition is called colon/rectum/anal stenosis. In anal stenosis, the anus will look normal externally, but it will not be connected to the bowel.

Another variation of the condition is called imperforate anus, where internal structures are normal, but the anus is closed over with skin. Babies may have small tube-like openings (called fistulas) from the bowel that open onto the skin of the perineum or that drain into the vagina or urethra. These various abnormalities may be low (in which case the nerves and muscles will be correctly formed but skin covers the anal opening). Other times the atresia or stenosis is higher in the pelvis; if high, nerves may be malformed and muscle structures can be affected.

Imperforate anus is usually discovered during the baby's newborn examination. The baby will have an unusual appearing anus coupled with abdominal distention, as the baby is unable to pass meconium (the first stool after birth, dark and sticky in consistency). Anal stenosis may not be immediately discovered but symptoms such as abdominal distention and poor feeding will be noticed soon after birth.

During early fetal life the bowel and surrounding structures may fail to develop, perhaps due to lack of blood supply to that area of the body. These conditions are sometimes detected before birth because of polyhydramnios (excess amniotic fluid). The cause is unknown. In some families, there is a hereditary pattern of several members having the condition, but this is not often the case. Maternal diabetes as well as prenatal alcohol use may be related to this disorder.

Anal atresia or stenosis occurs in about 3 of 10,000 live births, with slightly more males affected. Imperforate anus occurs in 1 of 5000 live births.

Using data from Minnesota births between 2016-2020, we found 217 babies were born with rectal and large intestinal atresia or stenosis, resulting in a rate of 6.7 babies per 10,000 births. Annually, about 43 babies were born with rectal and large intestinal atresia or stenosis.

Parental education and support are essential, and local, regional, and national organizations may be very helpful.

Condition specific organizations

  • Complex Child
  • Pull Through Network
  • Colonic Atresia & Stenosis - NIDDK
  • Rectal atresia and stenosis: unique anorectal malformations
Tags
  • rectal and large intestinal atresia or stenosis
Last Updated: 12/26/2025
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